Transcript: lnc-TNFAIP2-7:1

Basic information

LNCipedia transcript ID: lnc-TNFAIP2-7:1 
LNCipedia gene ID: lnc-TNFAIP2-7
Ensembl Gene ID: ENSG00000278071
Ensembl Transcript ID: ENST00000618272
Location (hg38): chr14:103208100-103208876
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 777 bp
Exons: 1
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000618272.1
Alternative gene names: ENSG00000278071.1; RP11-736N17.10; AL161669.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -176.6995 non-coding 
CPAT coding probability 0.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TNFAIP2-7:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-TNFAIP2-7:1
4.1 lnc-TNFAIP2-7:1
5.0 lnc-TNFAIP2-7:1
5.1 lnc-LBHD2-11:1
5.2 lnc-TNFAIP2-7:1