Transcript: lnc-TRIM26-2:20

Basic information

LNCipedia transcript ID: lnc-TRIM26-2:20 
LNCipedia gene ID: lnc-TRIM26-2
Location (hg38): chr6:30287397-30326373
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 6026 bp
Exons: 4
Sources: NONCODE v4
Alternative transcript names: NONHSAT108615
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score 2.004 non-coding 
CPAT coding probability 4.24% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TRIM26-2:20 no no no no

Available literature

  1. Wang (2015), Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer., Nucleic Acids Res.
  2. Ning (2014), LincSNP: a database of linking disease-associated SNPs to human large intergenic non-coding RNAs., BMC Bioinformatics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TRIM26-2:20
4.0 lnc-TRIM26-2:20
4.1 lnc-TRIM26-2:20
5.0 lnc-TRIM26-2:20
5.1 lnc-SFTA2-26:40
5.2 lnc-TRIM26-2:20