Transcript: lnc-TRIM26-2:31

Basic information

LNCipedia transcript ID: lnc-TRIM26-2:31 
LNCipedia gene ID: lnc-TRIM26-2
Location (hg38): chr6:30290822-30295040
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2348 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT108620
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 1 non-coding 
PhyloCSF score -33.9887 non-coding 
CPAT coding probability 2.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-TRIM26-2:31 no no no no

Available literature

  1. Wang (2015), Identification of lncRNA-associated competing triplets reveals global patterns and prognostic markers for cancer., Nucleic Acids Res.
  2. Ning (2014), LincSNP: a database of linking disease-associated SNPs to human large intergenic non-coding RNAs., BMC Bioinformatics


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TRIM26-2:31
4.0 lnc-TRIM26-2:31
4.1 lnc-TRIM26-2:31
5.0 lnc-TRIM26-2:31
5.1 lnc-SFTA2-26:55
5.2 lnc-TRIM26-2:31