Transcript: lnc-TRIML2-14:5

Basic information

LNCipedia transcript ID: lnc-TRIML2-14:5 
LNCipedia gene ID: lnc-TRIML2-14
Ensembl Gene ID: ENSG00000250626
Ensembl Transcript ID: ENST00000514297
Location (hg38): chr4:188777679-188796633
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1991 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000514297; ENST00000514297.2; RP11-756P10.2-001; OTTHUMT00000360039.3; NONHSAT147313
Alternative gene names: ENSG00000250626; RP11-756P10.2; ENSG00000250626.2; OTTHUMG00000160282.3; AC093909.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 1.2631 non-coding 
CPAT coding probability 0.73% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TRIML2-14:5 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TRIML2-5:5
3.1 lnc-TRIML2-6:5
4.0 lnc-TRIML2-14:5
4.1 lnc-TRIML2-14:5
5.0 lnc-TRIML2-14:5
5.1 lnc-FRG2-16:5
5.2 lnc-TRIML2-14:5