Transcript: lnc-TRMT61B-5:1

Basic information

LNCipedia transcript ID: lnc-TRMT61B-5:1 
LNCipedia gene ID: lnc-TRMT61B-5
Ensembl Gene ID: ENSG00000229951
Ensembl Transcript ID: ENST00000427929
RefSeq ID: NR_103831
Location (hg38): chr2:28384409-28394672
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2850 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - Dec 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000427929; ENST00000427929.1; AC104695.3-001; OTTHUMT00000324559.1; NONHSAT069821; NR_103831; ENST00000427929.5; NR_103831.1
Alternative gene names: ENSG00000229951; AC104695.3; ENSG00000229951.1; OTTHUMG00000151946.1; ENSG00000229951.5; FLJ31356; AC104695.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -107.2605 non-coding 
CPAT coding probability 21.00% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TRMT61B-5:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TRMT61B-4:2
3.1 lnc-TRMT61B-5:1
4.0 lnc-TRMT61B-5:1
4.1 lnc-TRMT61B-5:1
5.0 lnc-TRMT61B-5:1
5.1 lnc-RBKS-20:9
5.2 lnc-TRMT61B-5:1