Transcript: lnc-TSKU-3:1

Basic information

LNCipedia transcript ID: lnc-TSKU-3:1 
LNCipedia gene ID: lnc-TSKU-3
Ensembl Gene ID: ENSG00000254975
Ensembl Transcript ID: ENST00000533588
Location (hg38): chr11:76675079-76703195
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 452 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000533588; ENST00000533588.1; RP11-672A2.3-001; OTTHUMT00000383015.2; NONHSAT023180
Alternative gene names: ENSG00000254975; RP11-672A2.3; ENSG00000254975.1; OTTHUMG00000165261.2; AP001189.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -104.2854 non-coding 
CPAT coding probability 13.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TSKU-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TSKU-2:1
3.1 lnc-TSKU-3:1
4.0 lnc-TSKU-3:1
4.1 lnc-TSKU-3:1
5.0 lnc-TSKU-3:1
5.1 lnc-DDIAS-67:1
5.2 lnc-TSKU-3:1