Transcript: lnc-TSNARE1-1:2

Basic information

LNCipedia transcript ID: lnc-TSNARE1-1:2 
LNCipedia gene ID: lnc-TSNARE1-1
Location (hg38): chr8:142194852-142196516
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 226 bp
Exons: 2
Sources: NONCODE v4; Hangauer et al., 2013
Alternative transcript names: NONHSAT129445; FPKM1_group_32489_transcript_2
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -64.1683 non-coding 
CPAT coding probability 15.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TSNARE1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TSNARE1-1:2
4.0 lnc-TSNARE1-1:2
4.1 lnc-TSNARE1-1:2
5.0 lnc-TSNARE1-1:2
5.1 lnc-SLURP2-9:2
5.2 lnc-TSNARE1-1:2