Transcript: lnc-TSPAN11-1:1

Basic information

LNCipedia transcript ID: lnc-TSPAN11-1:1 
LNCipedia gene ID: lnc-TSPAN11-1
Location (hg38): chr12:31012503-31015667
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 348 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015
Alternative transcript names: ENST00000537555; ENST00000537555.1; RP11-551L14.6-001; OTTHUMT00000399892.1; NONHSAT027529
Alternative gene names: ENSG00000256984; RP11-551L14.6; ENSG00000256984.1; OTTHUMG00000168486.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -35.8277 non-coding 
CPAT coding probability 11.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TSPAN11-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-TSPAN11-1:1
3.1 lnc-TSPAN11-1:1
4.0 lnc-TSPAN11-1:1
4.1 lnc-TSPAN11-1:1
5.0 lnc-TSPAN11-1:1
5.1 lnc-KIAA1551-30:1
5.2 lnc-TSPAN11-1:1