Transcript: lnc-TUBGCP6-5:2

Basic information

LNCipedia transcript ID: lnc-TUBGCP6-5:2 
LNCipedia gene ID: lnc-TUBGCP6-5
Ensembl Gene ID: ENSG00000273253
Ensembl Transcript ID: ENST00000608025
Location (hg38): chr22:50199090-50200837
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1001 bp
Exons: 2
Sources: Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000608025.2
Alternative gene names: ENSG00000273253.2; RP3-402G11.26; AL022328.4


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score -4.8264 non-coding 
CPAT coding probability 3.99% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TUBGCP6-5:2 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.0 lnc-TUBGCP6-5:2
4.1 lnc-TUBGCP6-5:2
5.0 lnc-TUBGCP6-5:2
5.1 lnc-HDAC10-5:1
5.2 lnc-TUBGCP6-5:2