Transcript: lnc-U2SURP-3:1

Basic information

LNCipedia transcript ID: lnc-U2SURP-3:1 
LNCipedia gene ID: lnc-U2SURP-3
Ensembl Gene ID: ENSG00000243818
Ensembl Transcript ID: ENST00000476385
Location (hg38): chr3:142926675-142942534
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1825 bp
Exons: 5
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005434; ENST00000476385.1; RP11-372E1.4-001; OTTHUMT00000354504.1
Alternative gene names: XLOC_002845; linc-SR140-2; ENSG00000243818.3; RP11-372E1.4; OTTHUMG00000159310.3; ENSG00000243818.4; AC021074.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -152.9276 non-coding 
CPAT coding probability 1.27% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-U2SURP-3:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-U2SURP-2:1
3.1 lnc-U2SURP-3:1
4.0 lnc-U2SURP-3:1
4.1 lnc-U2SURP-3:1
5.0 lnc-U2SURP-3:1
5.1 lnc-PXYLP1-24:2
5.2 lnc-U2SURP-3:1

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