Transcript: lnc-UNC5CL-3:1

Basic information

LNCipedia transcript ID: lnc-UNC5CL-3:1 
LNCipedia gene ID: lnc-UNC5CL-3
Ensembl Gene ID: ENSG00000236075
Ensembl Transcript ID: ENST00000414505
Location (hg38): chr6:40501631-40502393
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 292 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000414505.1; RP11-121P10.1-001; OTTHUMT00000040487.1; NONHSAT112689
Alternative gene names: ENSG00000236075.1; RP11-121P10.1; OTTHUMG00000014661.1; AL359475.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -181.1319 non-coding 
CPAT coding probability 3.45% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-UNC5CL-3:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-UNC5CL-3:1
4.0 lnc-UNC5CL-3:1
4.1 lnc-UNC5CL-3:1
5.0 lnc-UNC5CL-3:1
5.1 lnc-TREML2-25:1
5.2 lnc-UNC5CL-3:1