Transcript: lnc-USP11-1:1

Basic information

LNCipedia transcript ID: lnc-USP11-1:1 
LNCipedia gene ID: lnc-USP11-1
Ensembl Gene ID: ENSG00000203402
Ensembl Transcript ID: ENST00000366224
Location (hg38): chrX:47297852-47298721
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 477 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00016985; ENST00000366224; ENST00000366224.2; RP11-571E6.3-001; OTTHUMT00000056411.1; NONHSAT136875
Alternative gene names: XLOC_007972; linc-ZNF157; ENSG00000203402; RP11-571E6.3; ENSG00000203402.2; OTTHUMG00000021439.1; AL591503.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 20.927 non-coding 
CPAT coding probability 0.23% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-USP11-1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-USP11-1:1
3.1 lnc-USP11-1:1
4.0 lnc-USP11-1:1
4.1 lnc-USP11-1:1
5.0 lnc-USP11-1:1
5.1 lnc-CHST7-26:1
5.2 lnc-USP11-1:1