Transcript: LINC01697:26

Basic information

LNCipedia transcript ID: LINC01697:26 
HGNC Gene Symbol: LINC01697    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1697
Ensembl Gene ID: ENSG00000232079
Ensembl Transcript ID: ENST00000458316
Location (hg38): chr21:28048447-28103580
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1122 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00028827; ENST00000458316; ENST00000458316.1; AL035610.1-004; OTTHUMT00000171689.1; NONHSAT081588
Alternative gene names: XLOC_013900; linc-USP16-5; ENSG00000232079; AL035610.1; ENSG00000232079.1; OTTHUMG00000078709.1; ENSG00000232079.2; ENSG00000232079.6; LINC01697


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -48.3908 non-coding 
CPAT coding probability 0.37% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01697:26 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-USP16-3:3
3.1 lnc-USP16-3:3
4.0 lnc-USP16-3:3
4.1 lnc-USP16-3:3
5.0 lnc-USP16-3:3
5.1 LINC01697:5
5.2 LINC01697:26