Transcript: lnc-VN1R1-2:1

Basic information

LNCipedia transcript ID: lnc-VN1R1-2:1 
LNCipedia gene ID: lnc-VN1R1-2
Ensembl Gene ID: ENSG00000268678
Ensembl Transcript ID: ENST00000597973
Location (hg38): chr19:57350848-57352012
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1045 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: NONHSAT068226; ENST00000597973.1
Alternative gene names: ENSG00000268678.1; CTC-444N24.13; AC005261.3; AC005261.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -120.8563 non-coding 
CPAT coding probability 44.67% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
lnc-VN1R1-2:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-VN1R1-2:1
4.0 lnc-VN1R1-2:1
4.1 lnc-VN1R1-2:1
5.0 lnc-VN1R1-2:1
5.1 lnc-ZNF772-7:1
5.2 lnc-VN1R1-2:1