Transcript: lnc-VPS37C-3:2

Basic information

LNCipedia transcript ID: lnc-VPS37C-3:2 
LNCipedia gene ID: lnc-VPS37C-3
Location (hg38): chr11:61027463-61043338
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3206 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00019644; NONHSAT021619
Alternative gene names: XLOC_009447; linc-SLC15A3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 37.6813 non-coding 
CPAT coding probability 2.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-VPS37C-3:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-SLC15A3-2:1
3.1 lnc-SLC15A3-3:1
4.0 lnc-VPS37C-3:2
4.1 lnc-VPS37C-3:2
5.0 lnc-VPS37C-3:2
5.1 lnc-LTBP3-171:2
5.2 lnc-VPS37C-3:2