Transcript: lnc-VSX1-1:4

Basic information

LNCipedia transcript ID: lnc-VSX1-1:4 
LNCipedia gene ID: lnc-VSX1-1
Ensembl Gene ID: ENSG00000230725
Ensembl Transcript ID: ENST00000454676
Location (hg38): chr20:25140789-25148790
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3168 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000454676; ENST00000454676.1; RP4-738P15.1-003; OTTHUMT00000078391.1; NONHSAT079129; ENST00000454676.5
Alternative gene names: ENSG00000230725; RP4-738P15.1; ENSG00000230725.1; OTTHUMG00000032113.1; ENSG00000230725.5; AL035252.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 6.6074 non-coding 
CPAT coding probability 32.59% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-VSX1-1:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-VSX1-1:4
3.1 lnc-VSX1-1:4
4.0 lnc-VSX1-1:4
4.1 lnc-VSX1-1:4
5.0 lnc-VSX1-1:4
5.1 lnc-CST4-45:5
5.2 lnc-VSX1-1:4