Transcript: lnc-WDR48-1:2

Basic information

LNCipedia transcript ID: lnc-WDR48-1:2 
LNCipedia gene ID: lnc-WDR48-1
Ensembl Gene ID: ENSG00000231243
Ensembl Transcript ID: ENST00000432250
Location (hg38): chr3:38823902-38825302
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 408 bp
Exons: 3
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00005513; ENST00000432250.1; RP11-134J21.1-001; OTTHUMT00000343222.1; NONHSAT089097
Alternative gene names: XLOC_002615; linc-WDR48; ENSG00000231243.1; RP11-134J21.1; OTTHUMG00000156164.1; AC116038.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -149.4437 non-coding 
CPAT coding probability 0.20% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-WDR48-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-WDR48-1:2
3.1 lnc-WDR48-1:2
4.0 lnc-WDR48-1:2
4.1 lnc-WDR48-1:2
5.0 lnc-WDR48-1:2
5.1 lnc-KLHL40-81:2
5.2 lnc-WDR48-1:2