Transcript: lnc-TBC1D31-2:2

Basic information

LNCipedia transcript ID: lnc-TBC1D31-2:2 
LNCipedia gene ID: lnc-TBC1D31-2
Ensembl Gene ID: ENSG00000253372
Ensembl Transcript ID: ENST00000524348
Location (hg38): chr8:122808770-122815774
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 758 bp
Exons: 5
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000524348.1; RP11-44N11.1-002; OTTHUMT00000381712.1; NONHSAT128503
Alternative gene names: ENSG00000253372.1; RP11-44N11.1; OTTHUMG00000165078.1; ENSG00000253372.5; AC016405.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 8.0161 non-coding 
CPAT coding probability 8.90% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-TBC1D31-2:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-WDR67-2:2
4.0 lnc-WDR67-2:2
4.1 lnc-WDR67-2:2
5.0 lnc-WDR67-2:2
5.1 lnc-TRMT12-19:2
5.2 lnc-TBC1D31-2:2