Transcript: SNHG21:18

Basic information

LNCipedia transcript ID: SNHG21:18 
LNCipedia gene ID: SNHG21
Ensembl Gene ID: ENSG00000259442
Ensembl Transcript ID: ENST00000558342
Location (hg38): chr15:82744223-82750289
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 1091 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000558342.1; RP11-752G15.8-001; OTTHUMT00000418412.1; NONHSAT047857
Alternative gene names: ENSG00000259442.1; RP11-752G15.8; OTTHUMG00000172406.1; SCARNA15HG; FSD2-AS1; RP11-752G15.6; AC105339.2; AC105339.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -24.7799 non-coding 
CPAT coding probability 2.33% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SNHG21:18 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-WHAMM-3:1
4.0 lnc-WHAMM-3:1
4.1 SNHG21:18
5.0 SNHG21:18
5.1 SNHG21:18
5.2 SNHG21:18