Transcript: lnc-XRN2-4:1

Basic information

LNCipedia transcript ID: lnc-XRN2-4:1 
LNCipedia gene ID: lnc-XRN2-4
Ensembl Gene ID: ENSG00000233492
Ensembl Transcript ID: ENST00000431034
Location (hg38): chr20:21530202-21530744
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 449 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00027910; ENST00000431034; ENST00000431034.1; RP5-984P4.4-001; OTTHUMT00000078277.1; NONHSAT078947
Alternative gene names: XLOC_013479; linc-PAX1-2; ENSG00000233492; RP5-984P4.4; ENSG00000233492.1; OTTHUMG00000032029.1; AL133325.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -440.9736 non-coding 
CPAT coding probability 0.74% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-XRN2-4:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-XRN2-2:1
3.1 lnc-XRN2-4:1
4.0 lnc-XRN2-4:1
4.1 lnc-XRN2-4:1
5.0 lnc-XRN2-4:1
5.1 lnc-XRN2-4:1
5.2 lnc-XRN2-4:1