Transcript: lnc-ZBTB37-1:1

Basic information

LNCipedia transcript ID: lnc-ZBTB37-1:1 
LNCipedia gene ID: lnc-ZBTB37-1
Ensembl Gene ID: ENSG00000224977
Ensembl Transcript ID: ENST00000424181
Location (hg38): chr1:174022509-174022985
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 335 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00000337; ENST00000424181; ENST00000424181.1; RP11-160H22.3-001; OTTHUMT00000084248.1; NONHSAT007720
Alternative gene names: XLOC_000468; linc-GPR52; ENSG00000224977; RP11-160H22.3; ENSG00000224977.1; OTTHUMG00000034820.1; AL121983.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -255.7559 non-coding 
CPAT coding probability 3.72% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZBTB37-1:1 no no no no

Available literature

  1. Gu (2015), Aberrant expression of long noncoding RNAs in chronic thromboembolic pulmonary hypertension., Mol Med Rep


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZBTB37-1:1
3.1 lnc-ZBTB37-1:1
4.0 lnc-ZBTB37-1:1
4.1 lnc-ZBTB37-1:1
5.0 lnc-ZBTB37-1:1
5.1 lnc-SOAT1-41:2
5.2 lnc-ZBTB37-1:1