Transcript: lnc-ZEB1-1:2

Basic information

LNCipedia transcript ID: lnc-ZEB1-1:2 
LNCipedia gene ID: lnc-ZEB1-1
Ensembl Gene ID: ENSG00000223834
Ensembl Transcript ID: ENST00000420945
Location (hg38): chr10:31604600-31606218
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 421 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017809; ENST00000420945; ENST00000420945.1; RP11-472N13.2-001; OTTHUMT00000047455.1; NONHSAT012622
Alternative gene names: XLOC_008441; linc-CCDC7; ENSG00000223834; RP11-472N13.2; ENSG00000223834.2; OTTHUMG00000017909.1; AL161935.1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -33.3286 non-coding 
CPAT coding probability 1.50% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZEB1-1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZEB1-1:2
3.1 lnc-ZEB1-1:2
4.0 lnc-ZEB1-1:2
4.1 lnc-ZEB1-1:2
5.0 lnc-ZEB1-1:2
5.1 lnc-NPY4R2-187:8
5.2 lnc-ZEB1-1:2