Transcript: LINC00554:6

Basic information

LNCipedia transcript ID: LINC00554:6 
LNCipedia gene ID: LINC00554
Location (hg38): chr13:99994899-99997909
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 3006 bp
Exons: 2
Sources: NONCODE v4
Alternative transcript names: NONHSAT034948
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -10.1415 non-coding 
CPAT coding probability 31.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC00554:6 no no no no

Available literature

  1. Chen (2018), The long noncoding RNA lncZic2 drives the self-renewal of liver tumor-initiating cells via the protein kinase C substrates MARCKS and MARCKSL1., J. Biol. Chem.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ZIC5-1:3
4.0 lnc-ZIC5-1:3
4.1 lnc-ZIC5-1:3
5.0 lnc-ZIC5-1:3
5.1 LINC00554:3
5.2 LINC00554:6