Transcript: SIRLNT:12

Basic information

LNCipedia transcript ID: SIRLNT:12 
LNCipedia gene ID: SIRLNT
Location (hg38): chr8:40298725-40343411
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 864 bp
Exons: 2
Sources: Broad Institute; NONCODE v4
Alternative transcript names: TCONS_00014983; NONHSAT126199
Alternative gene names: XLOC_007064; linc-ADAM2-3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -39.2155 non-coding 
CPAT coding probability 2.64% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SIRLNT:12 no no no no

Available literature

  1. Liang (2018), A novel long non-coding RNA-PRLB acts as a tumor promoter through regulating miR-4766-5p/SIRT1 axis in breast cancer., Cell Death Dis


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZMAT4-3:4
3.1 lnc-ZMAT4-3:4
4.0 lnc-ZMAT4-3:4
4.1 lnc-ZMAT4-3:4
5.0 lnc-ZMAT4-3:4
5.1 SIRLNT:5
5.2 SIRLNT:12