Transcript: SIRLNT:14

Basic information

LNCipedia transcript ID: SIRLNT:14 
HGNC Gene Symbol: SIRLNT    
HGNC Full Gene Name: SIRT1 regulating lncRNA tumor promoter
Ensembl Gene ID: ENSG00000253802
Ensembl Transcript ID: ENST00000521030
Location (hg38): chr8:40333173-40343363
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 663 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000521030; ENST00000521030.1; CTA-392C11.1-001; OTTHUMT00000376947.1; NONHSAT126202
Alternative gene names: ENSG00000253802; CTA-392C11.1; ENSG00000253802.1; OTTHUMG00000164047.1; AC105999.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -62.8914 non-coding 
CPAT coding probability 0.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
SIRLNT:14 no no no no

Available literature

  1. Liang (2018), A novel long non-coding RNA-PRLB acts as a tumor promoter through regulating miR-4766-5p/SIRT1 axis in breast cancer., Cell Death Dis


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZMAT4-3:6
3.1 lnc-ZMAT4-3:6
4.0 lnc-ZMAT4-3:6
4.1 lnc-ZMAT4-3:6
5.0 lnc-ZMAT4-3:6
5.1 SIRLNT:7
5.2 SIRLNT:14