Transcript: lnc-ZNF32-3:4

Basic information

LNCipedia transcript ID: lnc-ZNF32-3:4 
LNCipedia gene ID: lnc-ZNF32-3
Ensembl Gene ID: ENSG00000236769
Ensembl Transcript ID: ENST00000438454
Location (hg38): chr10:43901365-43912326
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 493 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00017961; ENST00000438454; ENST00000438454.1; RP11-168P8.5-001; OTTHUMT00000047735.1; NONHSAT013002
Alternative gene names: XLOC_008792; linc-ZNF32-1; ENSG00000236769; RP11-168P8.5; ENSG00000236769.1; OTTHUMG00000018052.1; AL139237.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -179.0892 non-coding 
CPAT coding probability 0.71% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF32-3:4 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF32-3:4
3.1 lnc-ZNF32-3:4
4.0 lnc-ZNF32-3:4
4.1 lnc-ZNF32-3:4
5.0 lnc-ZNF32-3:4
5.1 lnc-LRRC18-88:4
5.2 lnc-ZNF32-3:4