Transcript: lnc-ZNF574-1:10

Basic information

LNCipedia transcript ID: lnc-ZNF574-1:10 
LNCipedia gene ID: lnc-ZNF574-1
Ensembl Gene ID: ENSG00000259436
Ensembl Transcript ID: ENST00000559786
Location (hg38): chr19:42152569-42157523
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1955 bp
Exons: 2
Sources: Biogazelle lncRNA chip; Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000510388; TCONS_00026792; ENST00000559786.1; CTC-378H22.2-001; OTTHUMT00000416146.1; NONHSAT066523
Alternative gene names: ENSG00000249075; XLOC_013083; linc-ZNF526-1; ENSG00000259436.1; CTC-378H22.2; OTTHUMG00000171961.1; AC010247.2


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -87.7455 non-coding 
CPAT coding probability 8.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
lnc-ZNF574-1:10 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF526-1:1
3.1 lnc-ZNF526-1:1
4.0 lnc-ZNF526-1:1
4.1 lnc-ZNF574-1:10
5.0 lnc-ZNF574-1:10
5.1 lnc-SHKBP1-37:10
5.2 lnc-ZNF574-1:10