Transcript: LINC01834:3

Basic information

LNCipedia transcript ID: LINC01834:3 
HGNC Gene Symbol: LINC01834    
HGNC Full Gene Name: long intergenic non-protein coding RNA 1834
Ensembl Gene ID: ENSG00000261316
Ensembl Transcript ID: ENST00000567374
Location (hg38): chr19:30907199-30909155
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 385 bp
Exons: 2
Sources: Broad Institute; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00026783; ENST00000567374.1; CTC-400I9.1-001; OTTHUMT00000431037.1; NONHSAT064128
Alternative gene names: XLOC_013035; linc-ZNF507-7; ENSG00000261316.1; CTC-400I9.1; OTTHUMG00000175758.1; LINC01834


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -74.4826 non-coding 
CPAT coding probability 2.57% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
LINC01834:3 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-ZNF536-1:1
3.1 lnc-ZNF536-1:1
4.0 lnc-ZNF536-1:1
4.1 lnc-ZNF536-1:1
5.0 lnc-ZNF536-1:1
5.1 LINC01834:2
5.2 LINC01834:3