Gene: PCAT1

Basic information

LNCipedia gene ID: PCAT1 
Location (hg38): chr8:126557758-127419050
Strand: +
Class: sense-overlapping
Sequence Ontology term: sense_overlap_ncRNA_gene
Transcripts: 48

Transcripts

Transcript IDLocation (hg38)Length
PCAT1:1 chr8:126838548-126878465 236 bp
PCAT1:2 chr8:126847055-127013713 734 bp
PCAT1:22 chr8:126557893-127292862 906 bp
PCAT1:24 chr8:126557912-126634987 562 bp
PCAT1:27 chr8:126713334-127292851 1231 bp
PCAT1:28 chr8:126713654-127064900 1057 bp
PCAT1:29 chr8:126823905-127007923 1530 bp
PCAT1:3 chr8:126877155-126877832 251 bp
PCAT1:30 chr8:126847043-126849388 484 bp
PCAT1:31 chr8:126847052-127013713 737 bp
PCAT1:32 chr8:126847081-126849556 471 bp
PCAT1:33 chr8:126865908-127064901 1565 bp
PCAT1:34 chr8:126876891-127399211 1538 bp
PCAT1:35 chr8:126876891-127013620 961 bp
PCAT1:36 chr8:126878472-127020424 1326 bp
PCAT1:37 chr8:126927277-127020330 1280 bp
PCAT1:38 chr8:126973235-127064895 1063 bp
PCAT1:39 chr8:126985964-127020423 1402 bp
PCAT1:4 chr8:127013154-127021014 1992 bp
PCAT1:40 chr8:126990811-127064891 969 bp
PCAT1:41 chr8:126990841-127051255 528 bp
PCAT1:42 chr8:127009528-127020424 823 bp
PCAT1:44 chr8:127244637-127374179 662 bp
PCAT1:45 chr8:127292812-127339435 770 bp
PCAT1:46 chr8:127322204-127340717 1460 bp
PCAT1:47 chr8:127322204-127346673 1101 bp
PCAT1:48 chr8:127322205-127419050 1562 bp
PCAT1:49 chr8:127339147-127392634 420 bp
PCAT1:5 chr8:126876891-127184374 2054 bp
PCAT1:51 chr8:127339280-127415022 696 bp
PCAT1:52 chr8:127339281-127394735 583 bp
PCAT1:53 chr8:126557758-126618468 1353 bp
PCAT1:54 chr8:126557758-126713776 764 bp
PCAT1:55 chr8:126557758-126635008 737 bp
PCAT1:56 chr8:126557875-126713415 574 bp
PCAT1:57 chr8:126557876-126617741 508 bp
PCAT1:58 chr8:126557876-126617896 564 bp
PCAT1:59 chr8:126557876-126676413 391 bp
PCAT1:6 chr8:127183917-127203395 16542 bp
PCAT1:60 chr8:126557876-126713415 573 bp
PCAT1:61 chr8:126557876-126713977 1017 bp
PCAT1:62 chr8:126557876-126713977 748 bp
PCAT1:63 chr8:126557886-126617741 498 bp
PCAT1:64 chr8:126557895-126676413 372 bp
PCAT1:65 chr8:126589214-126634784 317 bp
PCAT1:66 chr8:126592273-126594829 632 bp
PCAT1:67 chr8:127244637-127392631 585 bp
PCAT1:68 chr8:127339274-127392631 290 bp


Locus conservation

Locus conservation?
PCAT1 no no no no

Available literature

  1. Xie (2016), Long non-coding RNAs in colorectal cancer., Oncotarget
  2. Kim (2015), Genome-wide transcript profiling reveals novel breast cancer-associated intronic sense RNAs., PLoS ONE
  3. Liu (2015), Inducing cell growth arrest and apoptosis by silencing long non-coding RNA PCAT-1 in human bladder cancer., Tumour Biol.
  4. Rupaimoole (2015), Long Noncoding RNA Ceruloplasmin Promotes Cancer Growth by Altering Glycolysis., Cell Rep
  5. Shi (2015), Upregulation of the long noncoding RNA PCAT-1 correlates with advanced clinical stage and poor prognosis in esophageal squamous carcinoma., Tumour Biol.
  6. Shih (2015), Non-Coding RNAs in Castration-Resistant Prostate Cancer: Regulation of Androgen Receptor Signaling and Cancer Metabolism., Int J Mol Sci
  7. Sugihara (2015), Noncoding RNA Expression Aberration Is Associated with Cancer Progression and Is a Potential Biomarker in Esophageal Squamous Cell Carcinoma., Int J Mol Sci
  8. Tantai (2015), Combined identification of long non-coding RNA XIST and HIF1A-AS1 in serum as an effective screening for non-small cell lung cancer., Int J Clin Exp Pathol
  9. Wang (2015), Upregulated lncRNA-UCA1 contributes to progression of lung cancer and is closely related to clinical diagnosis as a predictive biomarker in plasma., Int J Clin Exp Med
  10. Yan (2015), Prognostic significance of long non-coding RNA PCAT-1 expression in human hepatocellular carcinoma., Int J Clin Exp Pathol
  11. Athie (2014), FAL1ing inside an amplicon., Cancer Cell
  12. Hu (2014), A functional genomic approach identifies FAL1 as an oncogenic long noncoding RNA that associates with BMI1 and represses p21 expression in cancer., Cancer Cell
  13. Mehra (2014), A novel RNA in situ hybridization assay for the long noncoding RNA SChLAP1 predicts poor clinical outcome after radical prostatectomy in clinically localized prostate cancer., Neoplasia
  14. Ning (2014), LincSNP: a database of linking disease-associated SNPs to human large intergenic non-coding RNAs., BMC Bioinformatics
  15. Prensner (2014), PCAT-1, a long noncoding RNA, regulates BRCA2 and controls homologous recombination in cancer., Cancer Res.
  16. Prensner (2014), The long non-coding RNA PCAT-1 promotes prostate cancer cell proliferation through cMyc., Neoplasia
  17. Su (2014), Comprehensive analysis of long non-coding RNAs in human breast cancer clinical subtypes., Oncotarget
  18. Walsh (2014), Long noncoding RNAs and prostate carcinogenesis: the missing 'linc'?, Trends Mol Med
  19. Xu (2014), Long non-coding RNA LSINCT5 predicts negative prognosis and exhibits oncogenic activity in gastric cancer., Medicine (Baltimore)
  20. Cao (2013), Integrated analysis of long noncoding RNA and coding RNA expression in esophageal squamous cell carcinoma., Int J Genomics
  21. Du (2013), Integrative genomic analyses reveal clinically relevant long noncoding RNAs in human cancer., Nat. Struct. Mol. Biol.
  22. Ge (2013), Overexpression of long noncoding RNA PCAT-1 is a novel biomarker of poor prognosis in patients with colorectal cancer., Med. Oncol.
  23. Kapusta (2013), Transposable elements are major contributors to the origin, diversification, and regulation of vertebrate long noncoding RNAs., PLoS Genet.
  24. Prensner (2013), The long noncoding RNA SChLAP1 promotes aggressive prostate cancer and antagonizes the SWI/SNF complex., Nat. Genet.
  25. Kelley (2012), Transposable elements reveal a stem cell-specific class of long noncoding RNAs., Genome Biol.
  26. Prensner (2011), Transcriptome sequencing across a prostate cancer cohort identifies PCAT-1, an unannotated lincRNA implicated in disease progression., Nat. Biotechnol.