Transcript: AATBC:10

Basic information

LNCipedia transcript ID: AATBC:10 
LNCipedia gene ID: AATBC
Location (hg38): chr21:43809208-43810434
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 351 bp
Exons: 2
Sources: Broad Institute
Alternative transcript names: TCONS_00029309
Alternative gene names: XLOC_014107; linc-CSTB-3;

RNA sequence:


Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 39.8164 non-coding 
CPAT coding probability 16.87% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
AATBC:10 no no no no

Available literature

  1. Zhao (2015), Knockdown of a novel lincRNA AATBC suppresses proliferation and induces apoptosis in bladder cancer., Oncotarget

LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CSTB-1:5
3.1 lnc-CSTB-1:6
4.0 AATBC:10
4.1 AATBC:10
5.0 AATBC:10
5.1 AATBC:10
5.2 AATBC:10