Downloads

LNCipedia download files are for non-commercial use only. Any other use should be approved in writing from Ghent University.

Full database (146,742 transcripts)

BED FASTA GFF GTF (UCSC compatible)
Version 4.1 GRCh37/hg19
GRCh38/hg38
download GRCh37/hg19
GRCh38/hg38
GRCh37/hg19
GRCh38/hg38

High confidence set

High confidence set annotation for LNCipedia 4.1 will be available shortly.


IGV

Use the links below to open the most recent version of LNCipedia in the Integrative Genomics Viewer (IGV).

Custom exports

You can use the search page to generate custom exports

Archive

BED FASTA GFF GTF (UCSC compatible)
Version 4.0 (full database) GRCh37/hg19
GRCh38/hg38
download GRCh37/hg19
GRCh38/hg38
GRCh37/hg19
GRCh38/hg38
Version 4.0 (high confidence set) GRCh37/hg19
GRCh38/hg38
download GRCh37/hg19
GRCh38/hg38
GRCh37/hg19
GRCh38/hg38
Version 3.1 (full database) GRCh37/hg19 download GRCh37/hg19 GRCh37/hg19
Version 3.1 (high confidence set) GRCh37/hg19 download GRCh37/hg19 GRCh37/hg19
Version 3.0 GRCh37/hg19 download GRCh37/hg19 GRCh37/hg19
Version 2.1 GRCh37/hg19 download GRCh37/hg19 GRCh37/hg19
Version 2.0 GRCh37/hg19 download GRCh37/hg19 -
Version 1.2 GRCh37/hg19 download GRCh37/hg19 -