Downloads

Full database

BED FASTA GFF GTF (UCSC compatible)
Version 5.2 GRCh37/hg19
GRCh38/hg38
download GRCh37/hg19
GRCh38/hg38
GRCh37/hg19
GRCh38/hg38

High confidence set (putative protein coding genes are excluded)

BED FASTA GFF GTF (UCSC compatible)
Version 5.2 GRCh37/hg19
GRCh38/hg38
download GRCh37/hg19
GRCh38/hg38
GRCh37/hg19
GRCh38/hg38

Conversion

You can use the conversion table to convert IDs from LNCipedia version 5.1 to LNCipedia version 5.2.

You can use the conversion table to convert IDs from LNCipedia version 5.0 to LNCipedia version 5.2.

UCSC Genome Browser trackhub

LNCipedia provides a trackhub to directly display the annotations in the UCSC Genome Browser and other genome browsers.

Click here to load the tracks in the UCSC Genome Browser or copy-paste this url in a genome browser of choice: https://www.lncipedia.org/trackhub/hub.txt

IGV

Use the links below to open the most recent version of LNCipedia in the Integrative Genomics Viewer (IGV).

Custom exports

You can use the search page to generate custom exports

Archive

BED FASTA GFF GTF (UCSC compatible)
Version 5.1 (full database) GRCh37/hg19
GRCh38/hg38
download GRCh37/hg19
GRCh38/hg38
GRCh37/hg19
GRCh38/hg38
Version 5.1 (high confidence set) GRCh37/hg19
GRCh38/hg38
download GRCh37/hg19
GRCh38/hg38
GRCh37/hg19
GRCh38/hg38
Version 5.0 (full database) GRCh37/hg19
GRCh38/hg38
download GRCh37/hg19
GRCh38/hg38
GRCh37/hg19
GRCh38/hg38
Version 5.0 (high confidence set) GRCh37/hg19
GRCh38/hg38
download GRCh37/hg19
GRCh38/hg38
GRCh37/hg19
GRCh38/hg38
Version 4.1 (full database) GRCh37/hg19
GRCh38/hg38
download GRCh37/hg19
GRCh38/hg38
GRCh37/hg19
GRCh38/hg38
Version 4.0 (full database) GRCh37/hg19
GRCh38/hg38
download GRCh37/hg19
GRCh38/hg38
GRCh37/hg19
GRCh38/hg38
Version 4.0 (high confidence set) GRCh37/hg19
GRCh38/hg38
download GRCh37/hg19
GRCh38/hg38
GRCh37/hg19
GRCh38/hg38
Version 3.1 (full database) GRCh37/hg19 download GRCh37/hg19 GRCh37/hg19
Version 3.1 (high confidence set) GRCh37/hg19 download GRCh37/hg19 GRCh37/hg19
Version 3.0 GRCh37/hg19 download GRCh37/hg19 GRCh37/hg19
Version 2.1 GRCh37/hg19 download GRCh37/hg19 GRCh37/hg19
Version 2.0 GRCh37/hg19 download GRCh37/hg19 -
Version 1.2 GRCh37/hg19 download GRCh37/hg19 -