Transcript: AATBC:13

Basic information

LNCipedia transcript ID: AATBC:13 
LNCipedia gene ID: AATBC
Location (hg38): chr21:43809030-43810361
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 553 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014
Alternative transcript names: ENST00000543603.1; AP001053.11-201
Alternative gene names: ENSG00000215458.4; AP001053.11; OTTHUMG00000086882.1;

RNA sequence:


Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 10.4187 non-coding 
CPAT coding probability 30.82% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
AATBC:13 no no no no

Available literature

  1. Zhao (2015), Knockdown of a novel lincRNA AATBC suppresses proliferation and induces apoptosis in bladder cancer., Oncotarget

LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CSTB-1:8
4.0 AATBC:13
4.1 AATBC:13
5.0 AATBC:13
5.1 AATBC:13
5.2 AATBC:13