Transcript: ADGRA1-AS1:2

Basic information

LNCipedia transcript ID: ADGRA1-AS1:2 
LNCipedia gene ID: ADGRA1-AS1
RefSeq ID: NR_111905
Location (hg38): chr10:133085244-133086697
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 475 bp
Exons: 3
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000444433.1; RP13-439H18.4-001; OTTHUMT00000051104.1; NONHSAT017120; NR_111905.1
Alternative gene names: ENSG00000256925.1; RP13-439H18.4; OTTHUMG00000019301.1; GPR123-AS1; ; ADGRA1-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -80.145 non-coding 
CPAT coding probability 12.09% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ADGRA1-AS1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TTC40-4:1
4.0 ADGRA1-AS1:2
4.1 ADGRA1-AS1:2
5.0 ADGRA1-AS1:2
5.1 ADGRA1-AS1:2
5.2 ADGRA1-AS1:2