Transcript: ADGRD1-AS1:6

Basic information

LNCipedia transcript ID: ADGRD1-AS1:6 
HGNC Gene Symbol: ADGRD1-AS1    
HGNC Full Gene Name: ADGRD1 antisense RNA 1
Ensembl Gene ID: ENSG00000256151
Ensembl Transcript ID: ENST00000542980
Location (hg38): chr12:130990138-130993976
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1277 bp
Exons: 3
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000542980; ENST00000542980.1; RP11-76C10.5-001; OTTHUMT00000399377.1; NONHSAT031996
Alternative gene names: ENSG00000256151; RP11-76C10.5; ENSG00000256151.1; OTTHUMG00000168346.1; ADGRD1-AS1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -80.0326 non-coding 
CPAT coding probability 1.70% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ADGRD1-AS1:6 yes no no no

Available literature

  1. Iyer (2015), The landscape of long noncoding RNAs in the human transcriptome., Nat. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-STX2-2:1
3.1 lnc-STX2-2:1
4.0 lnc-STX2-2:1
4.1 lnc-STX2-2:1
5.0 lnc-STX2-2:1
5.1 ADGRD1-AS1:2
5.2 ADGRD1-AS1:6