Transcript: AFDN-DT:15

Basic information

LNCipedia transcript ID: AFDN-DT:15 
LNCipedia gene ID: AFDN-DT
Location (hg38): chr6:167821421-167826788
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 3182 bp
Exons: 4
Sources: FANTOM CAT (stringent)
Alternative transcript names: ENSG00000198221.7|ENCT00000393744.1
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites non-coding 
PhyloCSF score 12.1306 non-coding 
CPAT coding probability 2.43% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
AFDN-DT:15 no no no no

Available literature

  1. Minaguchi (1999), Complete DNA sequence and characterization of a 330-kb VNTR-rich region on chromosome 6q27 that is commonly deleted in ovarian cancer., DNA Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
4.1 MLLT4-AS1:11
5.0 MLLT4-AS1:11
5.1 AFDN-DT:5
5.2 AFDN-DT:15