Transcript: AFDN-DT:20

Basic information

LNCipedia transcript ID: AFDN-DT:20 
LNCipedia gene ID: AFDN-DT
Location (hg38): chr6:167825691-167826455
Strand: -
Class: bidirectional
Sequence Ontology term:
Transcript size: 723 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014
Alternative transcript names: TCONS_00011616; ENST00000414943; ENST00000414943.1; MLLT4-AS1-202; NONHSAT116117
Alternative gene names: XLOC_005925; linc-TCP10-5; ENSG00000198221; C6orf124; ENSG00000198221.6; MLLT4-AS1; OTTHUMG00000016029.2; ENSG00000198221.7; HGC6.4; dJ431P23.3


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 46.8415 non-coding 
CPAT coding probability 95.12% coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
AFDN-DT:20 no no no no

Available literature

  1. Minaguchi (1999), Complete DNA sequence and characterization of a 330-kb VNTR-rich region on chromosome 6q27 that is commonly deleted in ovarian cancer., DNA Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C6orf123-1:4
3.1 lnc-C6orf123-1:4
4.0 MLLT4-AS1:4
4.1 MLLT4-AS1:4
5.0 MLLT4-AS1:4
5.1 AFDN-DT:10
5.2 AFDN-DT:20