Transcript: AFDN-DT:21

Basic information

LNCipedia transcript ID: AFDN-DT:21 
HGNC Gene Symbol: AFDN-DT    
HGNC Full Gene Name: AFDN divergent transcript
Ensembl Gene ID: ENSG00000198221
Ensembl Transcript ID: ENST00000425438
Location (hg38): chr6:167824110-167824774
Strand: -
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 311 bp
Exons: 2
Sources: Broad Institute; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: TCONS_00011615; ENST00000425438; ENST00000425438.1; MLLT4-AS1-002; OTTHUMT00000043144.1; NONHSAT116114
Alternative gene names: XLOC_005925; linc-TCP10-5; ENSG00000198221; C6orf124; ENSG00000198221.6; MLLT4-AS1; OTTHUMG00000016029.2; ENSG00000198221.7; ENSG00000198221.8; HGC6.4; dJ431P23.3; AFDN-AS1; AFDN-DT


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -151.5307 non-coding 
CPAT coding probability 8.32% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
AFDN-DT:21 no no no no

Available literature

  1. Minaguchi (1999), Complete DNA sequence and characterization of a 330-kb VNTR-rich region on chromosome 6q27 that is commonly deleted in ovarian cancer., DNA Res.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-C6orf123-1:6
3.1 lnc-C6orf123-1:6
4.0 MLLT4-AS1:6
4.1 MLLT4-AS1:6
5.0 MLLT4-AS1:6
5.1 AFDN-DT:11
5.2 AFDN-DT:21