Transcript: AFF1-AS1:12

Basic information

LNCipedia transcript ID: AFF1-AS1:12 
LNCipedia gene ID: AFF1-AS1
Location (hg38): chr4:86888140-86936178
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 708 bp
Exons: 5
Sources: NONCODE v4
Alternative transcript names: NONHSAT097286
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 5.6416 non-coding 
CPAT coding probability 1.39% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
AFF1-AS1:12 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC10A6-2:2
4.0 lnc-C4orf36-2:2
4.1 lnc-C4orf36-2:2
5.0 lnc-C4orf36-2:2
5.1 AFF1-AS1:5
5.2 AFF1-AS1:12