Transcript: AFF1-AS1:17

Basic information

LNCipedia transcript ID: AFF1-AS1:17 
LNCipedia gene ID: AFF1-AS1
Location (hg38): chr4:86888160-86892422
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 585 bp
Exons: 4
Sources: NONCODE v4
Alternative transcript names: NONHSAT097287
Alternative gene names:


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 169.9878 coding 
CPAT coding probability 1.15% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: no

Locus conservation

Locus conservation?
AFF1-AS1:17 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-SLC10A6-2:7
4.0 lnc-C4orf36-2:7
4.1 lnc-C4orf36-2:7
5.0 lnc-C4orf36-2:7
5.1 AFF1-AS1:10
5.2 AFF1-AS1:17