Transcript: AGBL5-IT1:1

Basic information

LNCipedia transcript ID: AGBL5-IT1:1 
HGNC Gene Symbol: AGBL5-IT1    
HGNC Full Gene Name: AGBL5 intronic transcript 1
Ensembl Gene ID: ENSG00000229122
Ensembl Transcript ID: ENST00000411862
Location (hg38): chr2:27061038-27061815
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 339 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000411862.1; AGBL5-IT1-001; OTTHUMT00000324707.1; NONHSAT069723
Alternative gene names: ENSG00000229122.1; AGBL5-IT1; OTTHUMG00000151991.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score non-coding 
CPAT coding probability 0.04% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
AGBL5-IT1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-EMILIN1-1:1
4.0 AGBL5-IT1:1
4.1 AGBL5-IT1:1
5.0 AGBL5-IT1:1
5.1 AGBL5-IT1:1
5.2 AGBL5-IT1:1