Transcript: ALDH1L1-AS2:1

Basic information

LNCipedia transcript ID: ALDH1L1-AS2:1 
HGNC Gene Symbol: ALDH1L1-AS2    
HGNC Full Gene Name: ALDH1L1 antisense RNA 2
Ensembl Gene ID: ENSG00000246022
Ensembl Transcript ID: ENST00000500232
RefSeq ID: NR_046383
Location (hg38): chr3:126180065-126210169
Strand: +
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 2324 bp
Exons: 2
Sources: Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000500232; ENST00000500232.2; ALDH1L1-AS2-001; OTTHUMT00000369862.2; NONHSAT091649; NR_046383.1
Alternative gene names: ENSG00000246022; ALDH1L1-AS2; ENSG00000246022.2; OTTHUMG00000162642.2;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -77.8372 non-coding 
CPAT coding probability 14.80% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ALDH1L1-AS2:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-CCDC37-5:1
3.1 lnc-CCDC37-5:1
4.0 ALDH1L1-AS2:1
4.1 ALDH1L1-AS2:1
5.0 ALDH1L1-AS2:1
5.1 ALDH1L1-AS2:1
5.2 ALDH1L1-AS2:1