Transcript: ALG9-IT1:1

Basic information

LNCipedia transcript ID: ALG9-IT1:1 
HGNC Gene Symbol: ALG9-IT1    
HGNC Full Gene Name: ALG9 intronic transcript 1
Ensembl Gene ID: ENSG00000254450
Ensembl Transcript ID: ENST00000531305
Location (hg38): chr11:111817214-111829212
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 684 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000531305.1; ALG9-IT1-001; OTTHUMT00000391500.1; NONHSAT024158
Alternative gene names: ENSG00000254450.1; ALG9-IT1; OTTHUMG00000166796.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -78.5722 non-coding 
CPAT coding probability 0.18% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ALG9-IT1:1 no no no no

Available literature

  1. Hrdlickova (2014), Expression profiles of long non-coding RNAs located in autoimmune disease-associated regions reveal immune cell-type specificity., Genome Med


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-FDXACB1-1:1
4.0 ALG9-IT1:1
4.1 ALG9-IT1:1
5.0 ALG9-IT1:1
5.1 ALG9-IT1:1
5.2 ALG9-IT1:1