Transcript: ALMS1-IT1:1

Basic information

LNCipedia transcript ID: ALMS1-IT1:1 
LNCipedia gene ID: ALMS1-IT1
Location (hg38): chr2:73456764-73459484
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 2107 bp
Exons: 2
Sources: NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017
Alternative transcript names: NONHSAT071621; ENST00000441587.2
Alternative gene names: ENSG00000230002.2; ALMS1-IT1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -10.0962 non-coding 
CPAT coding probability 0.86% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ALMS1-IT1:1 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CCT7-2:2
4.0 ALMS1-IT1:1
4.1 ALMS1-IT1:1
5.0 ALMS1-IT1:1
5.1 ALMS1-IT1:1
5.2 ALMS1-IT1:1