Transcript: ALMS1-IT1:2

Basic information

LNCipedia transcript ID: ALMS1-IT1:2 
LNCipedia gene ID: ALMS1-IT1
RefSeq ID: NR_046762
Location (hg38): chr2:73457103-73459482
Strand: +
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 1766 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; Refseq - NCBI Annotation Release 106
Alternative transcript names: ENST00000441587.1; ALMS1-IT1-001; OTTHUMT00000327862.1; NR_046762.1
Alternative gene names: ENSG00000230002.1; ALMS1-IT1; OTTHUMG00000152785.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -10.0962 non-coding 
CPAT coding probability 0.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ALMS1-IT1:2 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-CCT7-2:1
4.0 ALMS1-IT1:2
4.1 ALMS1-IT1:2
5.0 ALMS1-IT1:2
5.1 ALMS1-IT1:2
5.2 ALMS1-IT1:2