Transcript: AMMECR1-IT1:1

Basic information

LNCipedia transcript ID: AMMECR1-IT1:1 
HGNC Gene Symbol: AMMECR1-IT1    
HGNC Full Gene Name: AMMECR1 intronic transcript 1
Ensembl Gene ID: ENSG00000224142
Ensembl Transcript ID: ENST00000418848
Location (hg38): chrX:110305420-110307221
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 561 bp
Exons: 2
Sources: Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000418848.1; AMMECR1-IT1-001; OTTHUMT00000057904.1; NONHSAT138169
Alternative gene names: ENSG00000224142.1; AMMECR1-IT1; OTTHUMG00000022194.1;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -87.9448 non-coding 
CPAT coding probability 0.25% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
AMMECR1-IT1:1 yes no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-GNG5P2-1:1
4.0 AMMECR1-IT1:1
4.1 AMMECR1-IT1:1
5.0 AMMECR1-IT1:1
5.1 AMMECR1-IT1:1
5.2 AMMECR1-IT1:1