Transcript: ANP32A-IT1:1

Basic information

LNCipedia transcript ID: ANP32A-IT1:1 
HGNC Gene Symbol: ANP32A-IT1    
HGNC Full Gene Name: ANP32A intronic transcript 1
RefSeq ID: NR_026808
Location (hg38): chr15:68803821-68807101
Strand: -
Class: intronic
Sequence Ontology term: sense_intronic_ncRNA
Transcript size: 3281 bp
Exons: 1
Sources: NONCODE v4; Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NONHSAT046901; NR_026808; NR_026808.1
Alternative gene names: FLJ11722; HsT18971; ANP32A-IT1


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score 7.8685 non-coding 
CPAT coding probability 13.35% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
ANP32A-IT1:1 yes no no no

Available literature

  1. Ota (2004), Complete sequencing and characterization of 21,243 full-length human cDNAs., Nat. Genet.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-ITGA11-5:1
4.0 ANP32A-IT1:1
4.1 ANP32A-IT1:1
5.0 ANP32A-IT1:1
5.1 ANP32A-IT1:1
5.2 ANP32A-IT1:1