Transcript: APCDD1L-DT:26

Basic information

LNCipedia transcript ID: APCDD1L-DT:26 
HGNC Gene Symbol: APCDD1L-DT    
HGNC Full Gene Name: APCDD1L divergent transcript
Ensembl Gene ID: ENSG00000231290
Ensembl Transcript ID: ENST00000427140
Location (hg38): chr20:58515379-58619888
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 2092 bp
Exons: 7
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000427140; ENST00000427140.1; RP5-907D15.2-001; OTTHUMT00000079883.2; ENST00000427140.5
Alternative gene names: ENSG00000231290; RP5-907D15.2; ENSG00000231290.1; OTTHUMG00000032847.2; APCDD1L-AS1; ENSG00000231290.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -116.3642 non-coding 
CPAT coding probability 14.95% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
APCDD1L-DT:26 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-VAPB-1:1
3.1 lnc-VAPB-1:1
4.0 APCDD1L-AS1:2
4.1 APCDD1L-AS1:2
5.0 APCDD1L-AS1:2
5.1 APCDD1L-DT:3
5.2 APCDD1L-DT:26