Transcript: APCDD1L-DT:31

Basic information

LNCipedia transcript ID: APCDD1L-DT:31 
HGNC Gene Symbol: APCDD1L-DT    
HGNC Full Gene Name: APCDD1L divergent transcript
Ensembl Gene ID: ENSG00000231290
Ensembl Transcript ID: ENST00000420279
Location (hg38): chr20:58515499-58547822
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 555 bp
Exons: 5
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000420279; ENST00000420279.1; RP5-907D15.2-006; OTTHUMT00000267918.1; NONHSAT080550; ENST00000420279.5
Alternative gene names: ENSG00000231290; RP5-907D15.2; ENSG00000231290.1; OTTHUMG00000032847.2; APCDD1L-AS1; ENSG00000231290.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -147.4111 non-coding 
CPAT coding probability 4.19% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
APCDD1L-DT:31 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-VAPB-1:4
3.1 lnc-VAPB-1:2
4.0 APCDD1L-AS1:7
4.1 APCDD1L-AS1:7
5.0 APCDD1L-AS1:7
5.1 APCDD1L-DT:8
5.2 APCDD1L-DT:31