Transcript: APCDD1L-DT:47

Basic information

LNCipedia transcript ID: APCDD1L-DT:47 
HGNC Gene Symbol: APCDD1L-DT    
HGNC Full Gene Name: APCDD1L divergent transcript
Ensembl Gene ID: ENSG00000231290
Ensembl Transcript ID: ENST00000424205
Location (hg38): chr20:58523160-58573824
Strand: +
Class: intergenic
Sequence Ontology term: lincRNA
Transcript size: 581 bp
Exons: 4
Sources: Biogazelle lncRNA chip; Ensembl release 64 - Sep 2011; Gencode v13; Ensembl release 68 - Jul 2012; NONCODE v4; Ensembl release 75 - Feb 2014; Ensembl release 83 - Dec 2015; Ensembl release 87 - Dec 2016; Ensembl release 90 - Aug 2017; Ensembl release 92 - Apr 2018
Alternative transcript names: ENST00000424205; ENST00000424205.1; RP5-907D15.2-005; OTTHUMT00000079887.1; NONHSAT080555
Alternative gene names: ENSG00000231290; RP5-907D15.2; ENSG00000231290.1; OTTHUMG00000032847.2; APCDD1L-AS1; ENSG00000231290.5;


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -110.1604 non-coding 
CPAT coding probability 1.75% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
APCDD1L-DT:47 no no no no

Available literature

No linked literature available at this time.


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
1.3 lnc-VAPB-1:8
3.1 lnc-VAPB-1:8
4.0 APCDD1L-AS1:11
4.1 APCDD1L-AS1:11
5.0 APCDD1L-AS1:11
5.1 APCDD1L-DT:24
5.2 APCDD1L-DT:47