Transcript: APTR:1

Basic information

LNCipedia transcript ID: APTR:1 
LNCipedia gene ID: APTR
RefSeq ID: NR_038361
Location (hg38): chr7:77683851-77697345
Strand: -
Class: antisense
Sequence Ontology term: antisense_lncRNA
Transcript size: 1978 bp
Exons: 3
Sources: Refseq - Dec 2014; Refseq - NCBI Annotation Release 106
Alternative transcript names: NR_038361; NR_038361.1
Alternative gene names: ; APTR


RNA sequence:

Structure:

Protein coding potential

Metric Raw result Interpretation
PRIDE reprocessing 2.0 0 non-coding 
Lee translation initiation sites 0 non-coding 
PhyloCSF score -33.6496 non-coding 
CPAT coding probability 2.88% non-coding 
Bazzini small ORFs 0 non-coding 

In stringent set: yes

Locus conservation

Locus conservation?
APTR:1 yes no no no

Available literature

  1. Negishi (2014), A new lncRNA, APTR, associates with and represses the CDKN1A/p21 promoter by recruiting polycomb proteins., PLoS ONE


LNCipedia transcript ID history

LNCipedia version LNCipedia transcript ID
3.1 lnc-TMEM60-1:6
4.0 APTR:1
4.1 APTR:1
5.0 APTR:1
5.1 APTR:1
5.2 APTR:1